Hi there, Mar5.
I appreciate you checking in with us. Let me help show your merchant fees on the check register.
Have you configured the settings for deposits and fees in QuickBooks Desktop? Before you can download them to your checking account, you'll need to choose an expense account to assign the fees to.
To change the deposit settings, please follow these steps:
Then, let's record the missing fees manually.
For further guidance, you can check out this article: Record Merchant Service Deposits.
This answer should point you in the right direction. Please keep me posted on how it goes once you've tried these steps. I'll be here to keep helping. Take care.