Deposits from PayPal and Stripe are being aassigned as Transfers rather than deposits. How can I fix?

I'm glad to see you here in the Community, @art22menius.

The categorization of your transactions in QuickBooks Online depends on how it was being cleared from your bank. However, you have the option to re-categorize your PayPal and Stripe entries by manually editing them one at a time. Just move the radio button from Transfer to Add to see the Select Category box. 

Once done, and the Action column shows Add, click the Batch actions drop-down and choose Accept Selected. This should add the transactions to your register in QuickBooks.

Please check out the screenshots below for reference:

Right after, you can now match the current transactions. Please see the articles attached below for complete details of adding and matching bank entries in QBO:

• Download, match, and categorize your bank transactions in QuickBooks Online
• Assign, categorize, edit, and add your downloaded banking transactions

You can find me here if you have any other concerns, I’m always available to assist you. Wishing you and your business continued success!