You can record the two-wire payments with the same accounts in the Banking window by categorizing. I'm happy to provide the steps on how to achieve this.
Here's how:
On the Banking page, locate and click the transaction one at a time.
Choose Categorize, then elect Vendor/customer in the drop-down.
In the Category drop-down, select Accounts Payable (A/P).
Once done, let's run your A/P reports in the Chart of Accounts (COA) to review its transaction history and current balance. See the sample screenshot below.