@Mott
This might be able to help you out.
Try this:
Go to the Employee profile, Click the pencil next to Pay.
Go down to the Payroll section, Edit the Deduction section. Add a deduction item called Split Paycheck (or Whatever you like). This will create an Other Current Liabilites account.
Add the amount that you need to be in paper check for every week.
This will take taxes out of the whole amount, before the deductions come out. Now, run your payroll, making sure that it is set to direct deposit.
After your payroll is run, you need to create a check for the employee, list the employees name, then use the payroll liabilities account as the account for the check. Enter the amount that you entered into the deduction rate line and print the check.
You’re all set. :)
