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Deactivating Bank Feeds in QuickBooks desktop requires no transactions waiting to be added to that account. As long as there are still downloaded transactions in your Bank Feeds that are not yet added to QB register, deactivating that account from Bank Feeds is not possible.
You have two options to remove those transactions.
If you opt to delete the downloaded transactions, then, you can mark it all and hit ignore. You can also switch to Register Mode and delete it from there. You can do that by selecting the downloaded file and delete it.
Deactivate Bank Feeds for an account
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