To my knowledge, Chase only lets you make individual deposits via the App.  So you'll want to enter them into QBO as individual Deposits so they'll match to your Bank Feed sync (assuming you have QBO connected to Chase).

Otherwise you'll have one large Deposit from the Bank and multiple new transactions that are download when you sync.  And I find that much more of a pain than I do entering in separate deposits.  (Assuming you're working in QBO on a regular computer with a keyboard and mouse, other wise it's a pain either way.)