Let me provide some insight on applying IGST on the product automatically, @mehul9k.
When you create expenses or bills for your purchases from other states, you'll want to make sure that you selected the correct IGST tax rate. This way, it'll be reported to the receiving vendor.
However, I still recommend contacting our Phone Support Team to make sure you'll have an accurate reporting in QuickBooks Online (QBO). They can also provide additional information about how IGST works in QBO.
To reach them, you can click the ? Help button at the top-right corner and select Contact Us to talk with a live agent.