The status of my paid invoices shows as not deposited, how can I change that?

Good Afternoon, @truecraftrepairs. 

I'm here to lend a helping hand by pointing you in the direction of where you can make a deposit. Before you follow the steps, I recommend checking out this article about deposits. 

1. Press the +New button in the left-hand menu bar. 
2. Select Bank Deposit. 
3. From the Account drop-down menu, choose the account you want to deposit the money into. 
4. Hit Save and close or Save and new. 

If you run into any trouble along the way, you can look into this link about recording and managing deposits. 

If you using QuickBooks Payments, cruise on over to this guide that can provide you with some additional information on when the Merchant Services deposits your money. 

Let me know if you need further assistance. Have a great day!