Applying the Journal Entry (JE) to the bill requires ensuring that the vendor's name is correct, lhenderson1.
Before that, may I know how you created the Journal Entry (JE)? This will help me better understand the situation and provide accurate information on why it’s not showing up in the Pay Bills section.
First, since the JE is not showing in the Pay Bills window and you're trying to apply it to the connected vendor, verify if the vendor's name is correctly entered in the JE.
If the vendor is correct and you created the JE with A/P credited and the account you chose debited, both the bill and the JE you created will appear in the Pay bills window under +New.


If you created the JE where A/P is debited and the account you chose is credited, the Pay Bills window under the +New menu will only show the bills you created. To apply the JE, go to the vendor's profile, click Mark as Paid, and both the JE and the bill you created will appear, allowing you to apply the payment.




In such cases, I recommend consulting your accountant to ensure accuracy and compliance with accounting standards.
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