GoCardless Invoices matched incorrectly

Hi

I'm new to quickbooks and need some help please.

We have our QBO set up with GoCardless attached. We had a group of invoices that were being paid via GoCardless but we updated a couple of them after they were initially sent out and resent them (big mistake, lesson learnt), but Gocardless still took the original amounts and have matched them against the updated invoices. So the invoices are marked as paid, but did not take into account the differences in amounts on a couple of the invoices.  Now the Tide payment has come in and can't be matched to the deposit as the amounts don't match.

So how do I rectify the issue?
Do I delete the GoCardless deposit then restore the invoices to the original amounts and then use the tide deposit to match and pay the invoices? I will need to have one invoice recognise the overpayment as a credit?  to a client and have another invoice recognise the underpayment some how too.

I hope that makes sense 

Thank you in advance 

Kathy