How do I fix downloaded bank deposits that show up as checks when 'added' to the register?

Hello there, rpsandy,

The reason why the checks you've received didn't show as deposit is because it wasn't deposited in the Undeposited Funds account. Once we directly deposit the check to a bank account instead of Undeposited Funds account, those transactions will automatically show as payments in the Chart of Accounts.

To fix that, follow these steps below:

1. Click Accounting on the left pane.
2. Select Chart of Accounts.
3. Select the appropriate bank account, then click the View register link in the ACTION column.
4. Locate the transactions.
5. Click the Edit button.
6. Select Undeposited Funds from the Deposit to drop-down menu.
7. Hit Save and close, then select Yes to confirm the changes.

Once done, we can now record and make bank deposits.

Stay in touch with me if you have more questions.