It could be that your invoices and their payment deposits are not linked that’s why you’re having inflated income (base on your screenshot). Will have to make sure they’ve match/link so that QuickBooks will recognize that they are just one income.
Thanks... this wasn’t the issue though. My deposits were matched but I found that the record from Sqaure was being deposited to Cash rather than to the bank account. I had to go back through all transactions from Sqaure and change them to deposit to the bank account. Then delete the transaction from the bank. Thankfully, QuickBooks automatically created a new one so then I just match the new one to the corrected deposit from Square.