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Hello there, @jcj226.
Thank you for joining the Community. I'd be glad to share some information about recording the Stripe fees in QuickBooks Online.
The Stripe fee is taken out automatically from the transaction you process and deposit the net into your bank. That's why, when you download the bank feeds, the fee is not being included.
To start, let's create the customer's invoice.
After that, you need to record the invoice payment.
Finally, enter a Bank Deposit for the Stripe fee to clear the balance from Undeposited Funds account and move it to your bank account.
Now that it's deposited, please go back to the Banking screen and see if you're able to match the payments.
The steps are quite complex. If you need additional help, feel free to reach out to our Customer Care support to help you further. They have tools that can help with the step-by-step process.
Here's how you can reach them:
That should point you in the right direction today.
Please don't hesitate to let me know if I can be of further assistance. Have a great rest of your week.