Hello, Beth P.
The option to sort by the payment and deposit is not possible in QuickBooks. We can only sort by Date, Type, Number/Ref, the amount, (Largest first), amount (smallest first), number ref, order entered, date and order entered, and cleared status. I'm sure many QuickBooks users would like this feature, too. Rest assured, our Product engineers are striving hard to develop the best features to suit the needs of our customers.
In the meantime, you can visit our Blog site. This is where we share recent happenings and future developments, such as updates to newly added features. The new things are always rolling out for QuickBooks to make work easier. Here's the link: The QuickBooks Blog.
Also for duplicate transactions, I will be adding this article to give you the process on deleting duplicates: Remove duplicate transactions in QuickBooks Desktop.
Please know that the Community and I are always here to help you out to secure you and your business easy and functional. Take care!