Once done deleting the paychecks, we'll automatically recalculate your tax liabilities. If you've already made a tax payment, our system will apply it as an overpayment toward future liability. To resolve this, I encourage you to browse this article: Handle a Tax Overpayment.
Please get back to us if you need additional assistance while working in QuickBooks. This way, we'll be able to lend you a helping hand.