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I know a way on how you can fix the off-schedule payroll of your employees, dsanford.
You can pause the Auto Payroll for that pay period and manually pay your employees. Then, Auto Payroll will start again with your next pay run in QuickBooks Online (QBO.
Here's how to run a manual payroll:
For more details about Auto Payroll, please check out this article: Turn on and manage your Auto Payroll.
I have a link here that provides you with articles about managing your employee's payroll: https://quickbooks.intuit.com/learn-support/en-us/payroll-and-workers/07?product=QuickBooks%20Online.
Keep me in the loop if you need a hand with running payroll reports or any QBO related. Have a great weekend.