I can help you correct your payroll taxes in QuickBooks Desktop.
The tax tracking type of your payroll items in QuickBooks Desktop determines where these taxes are reported on your forms. Since the payroll item is incorrectly set up, you must edit and correct it first to make sure you get the accurate tax information.
Before doing any troubleshooting, I'd recommend creating a backup copy to make sure your file is safe from any accidental data loss.
Once done, you can run a Payroll Checkup to determine any tax discrepancy. It also offers suggestions on how to fix the problem. Please follow the steps below to get started.
Go to the Employees tab.
Go to Payroll setup
Select Run Payroll Checkup.
Click Data Review.
Follow the instructions that appear for each item that has a red "fix it" error.