Hi jenboren84,
No, the First United Bank issue won't affect your direct deposit since the transactions are separate from Online Banking transactions. You'll want to upload those missing bank transactions into your QuickBooks Online (QBO) account if they are not downloading from your bank.
Please check this article for more information and detailed steps: Manually Upload Transactions Into QuickBooks Online.
For future reference, please check this article in case you want to match bank transactions: Match and Categorize Bank Transactions in QuickBooks Online.
Post a comment below if you need further assistance. I'll be happy to help.