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How can a check print in an amount that doesn't match the invoices that were clicked to pay?
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Actually.... In re-reading your question, you can print a check for any amount you want.
When you go into the Bill Pay section and select an invoice the amount owed will be the default in the last column. But you can change that amount and partially pay an invoice.
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How can a check print in an amount that doesn't add up to the invoices that were selected?
Were there also Credits applied?