Welcome and thank you for reaching out to us here on the Community page, @KacyJ
I'm here to share some insights about reconciling accounts in QuickBooks Desktop.
When recreating the credit card payment, make sure that the transaction's date is the same with accidentally deleted one. Incorrect date/s sometimes cause a discrepancy in the reconciliation. Also, if the deleted payment was already reconciled, you can manually clear the recreated payment from the register.
- Select Chart of Accounts from the Lists menu.
- Look for the account, then double-click it to open.
- Locate the payment, then go to the ✓ column.
- Clear the transaction from there.
Also, you can consider checking this article for additional reference about fixing reconciliation issues in QuickBooks Desktop.
Let me know if you have any other questions. I'm always here to help. Have a good day!