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I also have this issue and need to have different emails depending on the invoice or client.
When I make the mistake of forgetting to modify the default email to match the invoice or client, it creates a mess.
It is really confusing that QBO has the email setup as part of the invoice style if multiple invoicese are supported but only one email format is actually supported. It doesn't make sense to be able to create multiple invoice styles and only one email that can be edited from all of the different invoice styles.