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Thank you for posting here in the Community, @contact80.
Let me share with you some information about the QuickBooks merchant account.
Currently, we can only connect the merchant account with QuickBooks Online, QuickBooks Desktop, and QuickBooks Point of Sales. Also, we can only link one company to the same merchant account.
With that being said, we're unable to use your merchant account to other website shopping cart. I suggest contacting your shopping website for help with processing payment options.
You can check out these articles for additional information about Merchant Account.
Feel free to fill me in if you have any other questions. Have a nice day!
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Which eCommerce platform do you have? One of the payment gateways is 2CO