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Hello there, @rhizosviticultur.
There are a couple of reasons you're having this type of issue. First, the Auto apply credits settings were turned on. You'll need to turn it off so it won't affect your invoice. Here's how:
Also, you can open to and unlink the payment for that specific invoice so that it won't automatically mark as Paid and Deposited. I'd be glad to show you how:
That should do it!
Check out these awesome articles to learn more on how to customize, send and print your invoices in QuickBooks Online:
Post again if you've got other concerns for your invoices in QuickBooks Online. I'd be around to back you up. Have a fantastic day and take care always!