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Buy nowWe use Shopify to host a website for us. Starting in January 2025 if our customer uses some app Shopify has been deducting the sales tax from the payment to us, and paying the tax agency direct. They only pay us for the goods sold minus their processing fee. How do I record this in Quickbooks?
Below is what it said on Shopify's website when I was questioning it.
Sales tax in Shop
Starting on January 1, 2025, the Shop channel will automatically collect, remit, and file taxes for all orders shipping to or within the United States. The Shop channel collects taxes on orders in all states (plus the District of Columbia) that administer statewide sales tax, as well as Alaska local sales tax. Tax is reported under SC Commerce Services Inc. For more information on how these taxes are calculated, refer to the US taxes reference page.
Note
Orders placed using Shop Pay from online stores are excluded from these tax calculations. This only applies to orders placed on Shop app.
Please help. I can't find anything on this online other than what AI gave me, and I don't know if it is accurate.
You can use the Bank Deposits feature in QuickBooks Desktop (QBDT) to manually record your revenue, sales tax remitted, and Shopify processing fees, Bray3214.

I recommend consulting your accountant to ensure proper recording methods, account classifications, and the use of appropriate accounts for deposits and processing fees.
If you have any additional concerns, please don’t hesitate to let us know.
I really do appreciate your response. I usually generate an invoice to code the payment to, but what do I put in the sales tax section of the invoice?
Thanks for your follow-up, Bray3214.
Since Shopify handles sales tax remittance directly, and you're entering the net payment you receive into QuickBooks, it's best to manage the sales tax within the deposit record instead of on an invoice.
However, since you prefer to use an invoice for recording sales revenue, processing fees, and the sales tax that Shopify remits on your behalf, we can create a sales tax adjustment item. Here's how:
Once done, create an invoice and enter the necessary line items for the products sold. Here's how:
Entering a negative value for your sales tax remitted and fee ensures your total invoice reflects that the sales tax was not directly received by you, but will still account for it properly in your reports.
The invoice should now reflect the total payment due.
Sales tax remittance processes can be complex, so I highly recommend consulting with your accountant or a tax professional to ensure everything aligns with your specific reporting and compliance requirements.
Please leave a reply below if you have further questions or concerns. We'd be glad to provide the necessary help.
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