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Progress invoice multiple estimates

I have client that creates multiple estimates for one job.  They then collect a 60% deposit prior to starting the project.  I know I can set up a liability and create deposit invoices, or the better way is to use progress invoices.  Most of our contractors want to see one invoice, with 60% of each estimate.  Progress invoicing allows you to create a 60% invoice per estimate, but how can I do this for multiple on one invoice?  And, will it show each item at 60% or just one line of 60% per estimate?