Good day, Elgin.
You can create an invoice, make partial payments, and deposit it directly to different funds/bank accounts.
But first, you'll have to turn off the Use Undeposited Funds as a default deposit to account feature so you can manually choose what bank account the payment will go to. Here's how:
Once done, create an invoice. Here's how:
Then, make partial payments. Here's how:
Follow the steps in making partial payments until you've deposited all amounts to the correct bank accounts.
After depositing it, you can turn on the Use Undeposited Funds as a default deposit to account feature back. Just follow the same steps above on how to turn it off, and just put a check mark in the box.
Feel free to let us know if you need more help. We're just around.