I'm having the same issue!!
I have counted the number of payments on the statement 209, I have gone through the quarter and ticked each one off, one by one and quickbooks counts 212 payments.
I'm not sure where the extra three are hiding but I've repeated this 4 times. There is definitely 209 on the statement and going through one by one by one we somehow arrive at 212.
I've started by clearing all ticks and it starts at 0 and at some point 3 hidden transitions arrive on the tally and there is a discrepancy of $1,877.50. I'm really confused! Please help.