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Level 1

PAYE Period problems with QuickBooks Online Advanced Payroll

Hoping someone can advise the best course of action - We had a delayed payment date for month 2 which took our PAYE for that period into month 3. We were unaware this would happen at the time until we had a nil submission notice from HMRC and discovered our pension and PAYE accounts were not showing any payments due. We have had to delay the payment date on the following 2 payruns to avoid incorrect tax and deductions but now have a problem with how to get 12 payruns into the tax year. We cannot roll back as we have Pensionsync activated. Does anyone know what we can do to get back on track?