Hello there, beccabookkeeper.
You've reached the right support that can help you get the reports you need in QuickBooks for Mac.
Good news. We can run the Deposit Detail report to show payments with invoice number. I'd be glad to walk you through the whole steps below:
Here are some helpful resources that you can refer to be more familiar with using QuickBooks Desktop for Mac:
You should be all set. If there's anything else you want to know more about reports, just fill me in and I'd be happy to assist.