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Hi
I too was getting quite concerned about this today, as I am a freelancer who also is paid for a part time job through PAYE. The problem with not taking PAYE salary into account is that the resultant tax calculation will be completely wrong due to the fact that the PAYE salary eats into all or some of the tax free allowance. This deems the QB tax estimate to be wrong, and understated. It's such a fundamental part of the self assessment tax return that it begs the question why this matter hasn't been addressed by Quickbooks already? It wouldn't be difficult to take into account, as all you need is the gross salary and tax already paid, then the tax calculation could be made accurately. I really hope Quickbooks look into this soon.
Many thanks.