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Get started with QuickBooks Online Payroll

by Intuit438 Updated 5 days ago

You’ll need to complete a few tasks before you can pay your team in QuickBooks Online Payroll Core, QuickBooks Online Payroll Premium, or QuickBooks Online Payroll Elite services. Here’s a handy guide and videos to help you get set up.

In this article, you'll learn how to:

Idea Tip: If you're not sure which QuickBooks Online Payroll plan you have, sign in to your account. Then, refresh this page for personalized steps, or follow these steps if you're the primary admin:

  1. Go to Settings Settings gear icon. and select Subscriptions and billing.
  2. The name of your payroll plan is in the second box.
Welcome to QuickBooks Online Payroll. Here, you can pay your employees and have QuickBooks automatically pay and file your payroll taxes on your behalf. Let’s go over where everything is in QuickBooks Online Payroll. Select the Payroll tab…Overview. This is where you pay your team. If you just signed up for QuickBooks Online Payroll, you can use the list of tasks to set up payroll correctly. You can also get help from our setup guide or check out videos to help you start. After you’ve run payroll for the first time, this page shows shortcuts to commonly used functions, like adding employees and editing payroll items. And you’ll see the status of your Automatic Taxes and Auto Payroll, as well as employee milestones. From the Employees tab, you see a list of employees you’ve added to QuickBooks and important facts about them, like pay rate and how you pay them. If you want more detail, select an employee. If you hire a new employee, select Add an employee to set them up. This is also where you can invite employees to QuickBooks Workforce so they can view their paycheques, paid time off, and W2s online. You can pay employees from this screen as well, and if you ever need to run payroll just for bonuses, use this button. The Contractors tab is where you track the contractors you send 1099s. From here, you can set up new contractors or pay them with a check or direct deposit. QuickBooks Online Payroll also helps you choose a workers’ comp plan…and choose employee benefits like health insurance and retirement plans using our benefits partners. If you use Payroll Premium or Elite, you can use the HR Advisor to help you hire and onboard employees…set policies…and more. Use the Compliance tab to read the latest news from federal and state agencies on taxes and other payroll rules. Select Taxes…Payroll Tax. This is where QuickBooks alerts you to anything that needs attention, or is coming up in the future for tax payments… …and tax form filing. This is also where you can see and print 941 forms, state forms and W2s, as well as past payments If you want QuickBooks to automatically pay and file your taxes and forms, go to the Payroll Overview page to see setup tasks you may still need to complete. If you use Payroll Premium or Elite, you can use the Time Tab to see who’s working and where, enter time, and approve employee time. Select Reports…and go to the Payroll section to run reports on payroll tax liabilities, total payroll cost, and more. To see your payroll preferences, select Settings…Payroll Settings. This is where you set up auto payroll…automated tax payments and form filings…request an increase to direct deposit limits…map payroll expenses and deductions to accounts on your Chart of Accounts…and more. You can also use the Settings menu to change your subscription and billing info. If you want to provide employees access to QuickBooks, select Manage users to add them. Check out this video to learn more about how to set up users. Now you're ready to start using QuickBooks to manage your payroll.


Start your payroll setup

Open payroll setup:

  1. Sign in to your account as the primary admin.
  2. Follow this link to complete the steps in product Open this link in a new window

If you have QuickBooks Online Payroll Elite, you can opt to have one of our experts set up payroll with you, or do it for you. Check out the Expert setup section to call or schedule an appointment.

  1. Select Get started.
  2. Select if you (or someone else) paid employees in the current year, then select Next.
  3. Select the date when you want to start paying your employees through QuickBooks, then select Next.
  4. Enter your main business address:
    1. Enter a physical address (not a PO Box). The work location determines your tax responsibilities.
    2. If you have multiple work locations, you can add those later when you add your employees.
    3. Select Next.
  5. Enter your main payroll contact info, then select Next.
    Note: This is generally the person responsible for paying your employees. The payroll contact will get important payroll notifications from us, and may speak with our payroll experts about your payroll account.
  6. Now you’ll start adding your employees. See Add your team below for details.
  7. If you haven’t paid any of your employees this year, you can opt to pay them now by paper cheque if needed. Or you can continue with the setup and finish the remaining setup tasks. See Set up tasks below.
    • If you opt to pay your employees now, you’re responsible for any payroll taxes due until you complete the payroll setup.
    • If you have paid employees this year, you’ll have more tasks to complete before you can run payroll. See Set up tasks below.


Set up tasks

The remaining setup tasks are bucketed into two sections: Get ready to pay your team and Let’s set up your taxes. 

To get to these tasks:

  1. Follow this link to complete the steps in product Open this link in a new window
  2. Select Start on the task you want to work on.


Add your team

You have a couple of options to help add some of your employee info. You’ll still need to add some info yourself. 

You can invite your employees to enter some of their own info through QuickBooks Workforce

Here's the info needed to add your employees:

  • Completed Form TD1 and any provincial equivalent forms if applicable.
  • Hire date.
  • Birth date.
  • Pay rate.
  • Any paycheque deductions such as contributions to insurance, retirement, or loan repayments.
  • Bank account for direct deposit (if applicable).
  • Sick, vacation, PTO accrual rates and balance (if applicable).

Check out these videos to learn how to add your employees:

How to add an employee to your payroll



Enter your tax info

In this task, you’ll add your federal and provincial payroll tax info. Here's the information you’ll need:

  • Business details like your Company legal name and Company legal address. This is the info you used when you applied for a business number with the CRA.
  • A CRA payroll number consisting of:
    • A nine-digit Business Number.
    • A four-digit Reference Number.
  • Forms used to calculate and submit your payroll taxes to the CRA (for example, Form PD7A).
  • How often you pay your employment taxes.

Note: If you run any payroll before this section is complete, you’ll need to make any tax payments or filing forms that come due. You won’t be able to do this from QuickBooks.



Add your payroll history

In this task, you'll enter year-to-date paycheque info for each employee you paid this year. We'll use this info to accurately report wages and taxes on T4s and other payroll tax forms. Here's the information you'll need:

  • Pay stubs or payroll reports for each employee paid for this calendar year.
  • Payroll reports with company totals of wages and taxes for each paycheque date in the current quarter.


Connect your bank

In this task, you’ll connect your payroll bank account so you can use direct deposit and we can pay and file your payroll taxes. You may be able to connect it instantly so you can use direct deposit right away. Here's the information you'll need:



Sign some tax forms

In this task, tell us how you want to handle your payroll tax payments and filings.

Note: Make sure you've connected your payroll bank account.

  • This lets you pay and file payroll taxes online to the CRA or Revenu Québec.
  • QuickBooks calculates and fills out T4 or Relevé 1 slip forms so they’re ready to print and file when you need to.