Hi Liftupcoffeebar,
In QuickBooks Payroll, there are 2 ways you can pay your employee's superannuation contribution.
1. Manual Payment directly through the super company paying the total superannuation figure from the payruns
2. Automated payment via BEAM
I found this link to a detailed article about the Automated Payment for Super, hope this helps.
https://support.yourpayroll.com.au/hc/en-au/articles/360000690855-Registering-with-Beam-to-automate-...
If you have further questions, do please get in touch! Cheers!