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Thanks for reaching out to the Community page, @epmartinep1.
Yes, you can reconcile the GSTR 2A on an annual basis using the GSTR 2A mismatch report in QuickBooks Online (QBO).
However, you'll need to make sure that your financial year is already over. This way, the Whole of financial year in the Report Period section would be available in this report.
If your fiscal year isn't finished yet, then this option would be greyed out. However, you can still generate this report on a monthly or quarterly basis and export this to Excel. This way, you can reconcile and compare your purchases in QuickBooks with your supplier’s invoices (GSTR 2A).
Here's how:
Once this is done, QuickBooks will now prepare your reconciliation report. When it's ready, you will see Completed in the Status/Progress. Simply click the Download link in the Action column to open an Excel sheet. This will show the list of data from QuickBooks and the GSTN portal displayed side by side.
For more details on how to reconcile the GSTR 2A in QBO, you can check out this link: How to interpret the GSTR 2A mismatch report in QuickBooks.
I'm just a reply away if you have other questions with QuickBooks Online. Just add the details of your concerns in this thread and I'll help you out.
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