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Hi jeant816,
If a pay run has been locked due to automated super payments, you will need to create an ad hoc pay run instead to make any changes. If you were intending to remove the earnings etc altogether, you would need to enter the ad hoc pay run as a negative pay run:
This creates a 'reversing' pay run that will cancel out the duplicate. If you need to report this change to the ATO, you can then lodge an Update Event to bring the updated figures across.
-Kass
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