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Hello there, @accounts509.
QuickBooks only depends on transactions imported from Stripe. If you're referring to the expenses as fees deduction, we can manually record them within your QBO account.
QuickBooks handles these expenses/fees by recording an invoice and payment without the fees. When recording a payment, make sure to deposit it to Undeposited funds. You can take a look at the sample screenshot below.
Afterward, record the payment with the fees by utilizing the Bank deposit feature. Here's how:
To keep your transactions accurate, you can check these articles:
If you're referring to something else, please let me know. I'm here to provide additional help. Take care and stay safe, accounts509.
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