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I have a suggestion that can help you reconcile your account, @shraddha-h-londo.
You can add the commission fees as another line item when you process a bank deposit. This is to match the transactions you have and to reconcile the account.
Here's how:
I'm including this sample screenshot for reference.
Once done, let's match the transactions by going to Banking, and clicking Match in the For Review section. You can also consult your accountant on how to categorise the transaction accurately.
I've added an article for your future reference when you're ready to assess your business income and expenses through QuickBooks Online: Reconcile an account in QuickBooks Online. This also includes how you can undo the process or fix errors.
Once done, you can always review the data by opening a Reconciliation Report. Just click the History by the account on the Reconcile page.
I'm always here to provide help and answer any questions that you may have with your transactions. Keep safe always, @shraddha-h-londo.
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