A way around this would be to create a new payrun that bring balances to what they should be.
if you have overpaid a staff member by Hours - 1
EARNINGS: $2
PAYG: $3
Super: $4
then create a payrun and put a minus in front of the hourly pay rate -$2. This will make the total figure result in a negative one. Adjust the payg and super amounts accordingly and with a minus in front of the amount.
the payrun should result in negative figure for earnings and payg and super, . This in turn corrects the overall total in payroll for that employee.
Lauren Ainslie
Queanbeyan Bookkeeping