Hi PaulC555 In order for you to account for you to account for the fees you'll have to receive payment on the invoice for the full amount, deposit it to the undeposited funds account, create a bank deposit, select the invoice, and in the 'add funds to this deposit' section add the fee/expense account in the account column and add the amount as a negative, the net amount of the deposit will match the amount you received. We've included an article on how to do the above. If you have any further questions please reach out to us and we'd be happy to help you.
https://quickbooks.intuit.com/learn-support/en-uk/help-article/bank-deposits/record-make-bank-deposi...
