Hello Thesquire46,
Welcome to the Community page,
Here are the steps you need to do to record this in Quickbooks,
1. Create the invoice for the customer making the donation
2. On line 1 have the donation-this would be set to an income account of the companies choosing
3. On line 2 have the GiftAid- confirm with an accountant as this could be set to a Debtor account which you then mark as paid when receiving the GiftAid
4.when the donation appears on the bank feed, mark the invoice as partially paid
5.When the GiftAid appears on the bank feed, pay off the rest of the invoice (depending if you receive GiftAid in bulk, you can batch receive payment on invoices and match the payment to the bank or do this per transaction)
Any questions at all let us know we'd be happy to help.