Can you provide more details about the issues your experiencing when trying to reconcile your Go Cardless transactions? This information will help us assist you more effectively and I'm here to help you resolve this, CaptainEon.
You'll have to make sure that your Go Cardless transactions matches with those recorded in QuickBooks. If you notice any missing transactions, you can add them or exclude if there are duplicates.
To manually add transactions to account registers:
- Go to the Gear icon and select Chart of accounts.
- Locate the account register you want to review.
- Click Account history from the Action column.
- At the top page, open the dropdown next to Add journal entry, Add check, or Add deposit menu.
- Choose the type of transaction you want to add.

- Fill out the fields to complete the transaction.

- Tick Save.
However, you can remove entries if these are duplicate transactions. Here's how:
- Navigate to the Transactions and select Bank transactions.
- Click on the For Review tab.
- Check the box of the transactions you wish to exclude.
- Choose Exclude.

If you want to undo a mistakenly excluded transactions, check this out: Excluded A Bank Transaction You Downloaded into QuickBooks Online.
Additionally, you might find it helpful to view, print or export reconciliation report for record keeping and for future reference, I've got this for you: View, Print, or Export Reconciliation Report in QuickBooks Online.
If you have any questions or other concerns with the reconciliation process, please let me know so I can get back to you. I'm always here ready to assist you anytime.