Yes I do. Don't rely on the matching as it's a bit naff.

If you are coming over from Desktop you are just best using the proper way and record a payment against the invoices paid. Once you do it this way the payment record in Banking section will then show the payment as matched. 

The trouble with the automatic matching is I think it only looks back at the previous 4 weeks or so, which is why if fails at matching the amounts automatically.