Hello Bigman_Paul,

You will not need to close the account and start from scratch but we will need to check a few details to get the VAT back on track. 

On your Taxes screen, have you marked a period as filed prior to your open return dating April - June? 

If you have marked a period as filed and have not submitted any subsequent returns to HMRC we can re-open this to allow you to re-mark the period as filed with the correct transactions which will remove the exceptions on your open return.