Hello Bels, Thanks for posting on the community page, So these steps and options are there if you have and use QuickBooks online advanced payroll.
Making a late submission
1. Open the pay run and open the Pay Run Actions.
2. Select Mark all as late submission and choose the appropriate reason for the late submission.
3. Select Apply.
If you unlock the payroll and go to the payroll actions you can submit payrun fps manually at a later date. If you have any issues we suggest you call the helpline on 0808 234 5337 the line is open mon to fri 8am to 7pm mon to fri.as you will be then able to set up a screenshare with the agent on the phone so it can be looked into more for you.