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Join nowHi Kallison and NorFrame,
The QuickBooks Online Square app only gives you the option to have those sales come over as a new transaction, so you're not able to match it to an existing invoice. That app also does bring over refunds, taxes, tips, and discounts. You could manually export a CSV from Square and manually import it into QBO, or you could link the bank account that those deposits are sent to. I hope that gives you the info that you're looking for. Let me know if you have more questions.