Hello, and welcome to the Community, samanthapedrosa1.
Any bank account can be used to pay federal estimated quarterly taxes. They can also be paid by mail. The second resource linked above by my colleague doesn't mention any restrictions in regard to which type of accounts payments can be submitted with.
If you choose to pay with a method that isn't connected to Online Banking, you'll have to manually record your payment. Here's how:
1. Open the Transactions menu in QuickBooks Self-Employed.
2. Use the Add transaction option and enter "(Date and fiscal year) quarterly federal tax payment" into the Description field.
3. Input the date and amount.
4. Select Select a category, Taxes, then Estimated Taxes.
5. Hit Save to finish.
I'm including an extensive article about these types of taxes which may come in handy: Estimated taxes explained
Please feel more than welcome to respond in this thread if you have any other questions. I'll be here to help. Enjoy the rest of your day!