Hello, BethR219.
Once we have an overpayment, QuickBooks will detect it and will automatically lower the amount of the next liability periods by the overpayment amount.
If our accountant recorded a short first payment through IRS, it's the same as how you record it in QuickBooks. Meaning, depending on how we pay our taxes is the way we should enter them into the QuickBooks Desktop (QBDT) system.
I also recommend reaching out to our accountant for further advice on how to properly handle your tax records in QuickBooks. This way, we can make sure that your books are accurate once you close them.
In addition, I've added these resources that we can use in the future about creating liability adjustments and running its report:
Let me know how else I can help you with QuickBooks by adding a comment below. I'm more than happy to lend a helping hand. Keep safe