Hi, @NameUser. Thanks for reaching out. Here’s a streamlined yet detailed guide to ensure you never miss any payments when generating accurate 1099‑NEC forms from QuickBooks Desktop.
The most common reasons for missing amounts are that vendors are not marked as 1099-eligible, and accounts are not mapped to Box 1 (Nonemployee compensation). Also, per IRS regulations, QuickBooks excludes payments made via credit cards, PayPal, or similar platforms, as these are reported separately on Form 1099‑K by the payment processor.
Follow these steps to resolve and ensure accuracy:
Step 1: Vendor setup
- Navigate to Vendors, then choose Vendor Center.
- Open each contractor’s profile and go to the Tax Settings tab.

- Check "Vendor's eligibility for 1099", ensure their Tax ID is entered, and confirm the payee name and address details.
Step 2: Map accounts
- From the Edit Menu, select Preferences.
- Under Tax, choose 1099.


- Click Company Preferences and select 1099‑NEC.
- Open Map Accounts or Settings. Assign any relevant expense accounts (e.g., Subcontractors, Professional Fees, Outside Services) to Box 1. Confirm the $600 reporting threshold is applied.
Step 3: Review totals
- Go to the Vendors menu, then select Print/E‑file 1099s (or Vendors > 1099 Forms) to select the tax year and form type (1099‑NEC).
- Use Reports, choosing Vendors & Payables. Then, the 1099 Summary or 1099 Detail is used to check amounts.
- Missing amounts usually result from an unmapped account, a vendor not marked eligible, or payments made via excluded methods like credit cards/PayPal.
Step 4: Final Print or E‑File
Once verified:
- Go to Vendors , select Print/E‑file 1099s. Confirm alignment, then print using preprinted forms.

- Alternatively, opt to e‑file directly from the same menu.
If you need additional assistance with payroll forms or 1099 processing, feel free to drop a comment below. We’d be happy to help.