@Chun95chula First, if you are using this as a way to recognize a payment of a liability, it would be cleaner to use the Make Deposit window, using the Liability as the source account.
This would establish the balance of the loan and increase the bank account balance by the $200,000.00 in a way that works better with most of the reports in QB; for whatever reason, QB's reports do not always source GJEs as well as you'd expect.
As to why you're having the issue specifically, it may help to share a picture of your JE as well as confirmation of what kind of account Cash is, and which account you are reconciling; the most straightforward explanation is that whatever you're debiting isn't the bank account you are reconciling, or that you have some other entry offsetting things, or that you dated the JE wrong.
