Hello, askkelli.
We can activate the late fees setting, set the fee's exact amount, and apply it to the invoice. After you enable the setting, QuickBooks calculates the late fees.
Here's how:
- Go to Settings, then choose Account and settings.
- Click Sales, then, in the Late fees, hit Edit.
- Turn on the Default charge applied to overdue invoices switch.
- Select the Percentage of remaining balance: Applies a percentage of the remaining amount of the invoice.
- Enter the Amount and/or Percent (%) of the fee.
- Tap the Frequency dropdown, then choose how often you charge customers.
- If you want to give them a grace period, pick how many days to give them from the dropdown.
- Modify the default name Late fee.
- Press Save and Done.

For additional details, check out this guide about late fees: Set up and apply automatic late fees to invoices.
If you need other references in the future, you may want to learn how to send and print invoices. I recommend checking out this article: Create invoices in QuickBooks Online.
Please let me know if you have any additional questions or concerns. I'm more than willing to help. Have a great day!