Hey there, @missionrapids-gm.
Thanks for reaching out to the QuickBooks Community. I hope your day is going great so far.
Typically, Square payroll imports into QuickBooks Online as Journal Entries. The difference in design between these applications is the cause of why they're imported as such.
Check out this page from our QuickBooks App Store in case you need further assistance: Square Payroll. It contains a support article for the 3rd party app and it also includes a phone number for Technical Support.
However, if you need some guidance on reconciling the Journal Entries, you can review the synced Journal Entries to see the bank and expense accounts they were posted to. This way, we can make changes so they'll appear when you reconcile it. I also suggest consulting an accountant to help you check the correct payroll accounts to be used.
Let me show you how to reconcile the account after modifying the transactions:
- Go to the Gear icon at the upper right.
- Click Reconcile under Tools.
- Select the correct account and add the following information that's shown in your bank statement.
- Click Start reconciling.
You can also check the reconciliation report after doing the process. Here's how:
- Still on the Reconcile page, click the History by account at the upper-right.
- Select the Account and Report period.
- Click the arrow under the ACTION column.
- Select View reports.
Please let me know if there is anything else I can assist you with. Take care and have a great day ahead!
